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Report for Sequence Feature Glyma12g08310

Feature Type:gene_model
Chromosome:Gm12
Start:6058350
stop:6062185
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g08310
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G28000AT Annotation by Michelle Graham. TAIR10: chaperonin-60alpha | chr2:11926603-11929184 FORWARD LENGTH=586 SoyBaseE_val: 0ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0009658GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast organization SoyBaseN/AISS
GO:0009790GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0016226GO-bp Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly SoyBaseN/AISS
GO:0042026GO-bp Annotation by Michelle Graham. GO Biological Process: protein refolding SoyBaseN/AISS
GO:0044267GO-bp Annotation by Michelle Graham. GO Biological Process: cellular protein metabolic process SoyBaseN/AISS
GO:0048481GO-bp Annotation by Michelle Graham. GO Biological Process: ovule development SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0022626GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
KOG0356 KOG Mitochondrial chaperonin, Cpn60/Hsp60p JGI ISS
PTHR11353Panther CHAPERONIN JGI ISS
PTHR11353:SF11Panther RUBISCO SUBUNIT BINDING-PROTEIN ALPHA SUBUNIT, RUBA JGI ISS
PF00118PFAM TCP-1/cpn60 chaperonin family JGI ISS
UniRef100_I1LR60UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LR60_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9ZTV1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Chaperonin 60 alpha subunit n=1 Tax=Canavalia lineata RepID=Q9ZTV1_CANLI SoyBaseE_val: 0ISS

Expression Patterns of Glyma12g08310
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g08310
ParalogEvidenceComments
Glyma11g20180 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g08310 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g078100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g08310
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g08310
>Glyma12g08310.1   sequence type=CDS   gene model=Glyma12g08310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCAACCAACGCTCTCTCTTCAGCCTCCATTCTACGCTCTCCCAACCGCCAGTCTCTGACCCGAAGAGCGAACCATAATGGAAGAGTAAATTACCGGAAACCGAATAACCGTTTCTCCGTGAAAGCCTCCGCCAAAGAGATTGCCTTTGACCAGCATTCCCGCTCTGCTATGCAGGCCGGCATTGACAAGCTCGCCGACGCTGTTGGGCTCACTCTTGGGCCCAGAGGGAGGAATGTTGTGTTGGATGAGTTTGGAAGTCCTAAAGTGGTCAACGATGGTGTCACCATTGCTCGCGCAATCGAGCTTCCCGATCCTATGGAGAATGCTGGTGCAGCTCTTATCAGAGAGGTTGCTAGCAAGACTAACGACTCTGCGGGTGATGGGACTACCACGGCTTCGGTTCTTGCTCGCGAGATAATTAAGCTGGGGCTTCTCAGTGTGACTTCTGGGGCAAATCCTGTGTCTCTTAAGAGAGGGATTGATAAGACTGTGCAGGGTTTGGTGGAGGAGTTGGAGAAGAAGGCTAGGCCTGTCAAAGGTGGAGATGATATCAAAGCTGTTGCTTCCATTTCTGCTGGAAATGATGAGTTGATTGGGCAAATGATTGCGGAAGCAATTGATAAGGTTGGACCTGATGGTGTTTTGTCCATTGAGTCTTCATCATCGTTTGAGACCACAGTTGAAGTGGAAGAAGGAATGGAGATTGACAGAGGGTATATCTCGCCTCAATTTGTTACAAACCCTGAGAAGTTGATTGTTGAATTTGAGAATGCGAGAGTGTTGATTACAGATCAGAAGATTTCAGCAATAAAAGACATTATACCACTGTTGGAGAAAACCACTCAGTTGAGAGCTCCTTTGCTTATCATTGCCGAGGATGTCACTGGTGAGGCTTTGGCCACCCTTGTCGTGAATAAGCTGCGTGGTATCCTTAACGTTGCTGCCATTAAAGCTCCTGGCTTTGGTGAGCGGCGAAAGGCCCTGCTTCAAGACATTGCTATATTGACTGGTGCTGAGTTCCAAGCTAGTGATCTGGGTCTGCTTGTTGAAAACACCTCAGTGGAGCAGCTTGGTTTGGCTAGGAAAATTACCATCTCCAAGGATTCTACCACTGTCATTGCTGATGCTGCGACAAAGGATGAGTTGCAAGCCAGGGTTGCTCAGTTAAAGAAGGAGCTGTCTCAGACAGACTCAGTATATGATACTGAGAAACTGGCTGAGAGGATAGCTAAACTGTCTGGTGGAGTTGCAGTCATCAAGGTTGGTGCTGCTACAGAGACTGAGCTTGAGGATCGGAAGCTCCGAATAGAGGATGCCAAGAATGCAACTTTTGCTGCCATTGAGGAAGGTATTGTACCTGGGGGTGGCACTGCACTGGTTCATCTCTCCACTCATGTCCCAGCAATCAAGGACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAGGCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGTGAAGTTGTTGTGGAGAAAATAAAGAGTGGTGAATGGGAGGTCGGTTACAATGCCATGGCAGACAGGTATGAGAATTTAGTGGAGGCTGGAGTTATCGACCCTGCCAAGGTAACTAGGTGTGCTTTGCAGAATGCTGCTTCAGTTGCTGGAATGGTGTTGACCACGCAGGCCATTGTGGTGGAGAAACCTAAGCCCAAGGCACCTGTAGCTGGTGCCCCACAAGGCCTTACCGTTTGA
Predicted protein sequences of Glyma12g08310
>Glyma12g08310.1   sequence type=predicted peptide   gene model=Glyma12g08310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTNALSSASILRSPNRQSLTRRANHNGRVNYRKPNNRFSVKASAKEIAFDQHSRSAMQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVQGLVEELEKKARPVKGGDDIKAVASISAGNDELIGQMIAEAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLITDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAILTGAEFQASDLGLLVENTSVEQLGLARKITISKDSTTVIADAATKDELQARVAQLKKELSQTDSVYDTEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSTHVPAIKDKLEDADERLGADIVQKALIAPAALIAQNAGIEGEVVVEKIKSGEWEVGYNAMADRYENLVEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAPVAGAPQGLTV*






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